ProteoWizard
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Public Member Functions | |
void | Run () |
Protected Member Functions | |
virtual void | SetUp () |
void | TearDown () |
void | TryGetScanIDTokenTest () |
void | initializeLarge (MSData &msd, size_t cycleSize=4, size_t numCycles=5) |
void | TryGetDemuxIndexTest () |
void | TryGetOriginalIndexTest () |
void | TryGetMSLevelTest () |
void | TryGetNumPrecursorsTest () |
void | TryGetStartTimeTest () |
void | FindNearbySpectraTest () |
Protected Attributes | |
const size_t | MS1_INDEX_0 = 0 |
const size_t | MS2_INDEX_0 = 1 |
const size_t | MS1_INDEX_1 = 2 |
const size_t | MS2_INDEX_1 = 3 |
MSData | _msd |
Spectrum_const_ptr | _s10 |
Spectrum_const_ptr | _s20 |
Spectrum_const_ptr | _s11 |
Spectrum_const_ptr | _s21 |
Definition at line 30 of file DemuxHelpersTest.cpp.
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Definition at line 33 of file DemuxHelpersTest.cpp.
References FindNearbySpectraTest(), SetUp(), TearDown(), TryGetDemuxIndexTest(), TryGetMSLevelTest(), TryGetNumPrecursorsTest(), TryGetOriginalIndexTest(), TryGetScanIDTokenTest(), and TryGetStartTimeTest().
Referenced by main().
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inlineprotectedvirtual |
Definition at line 48 of file DemuxHelpersTest.cpp.
References _msd, _s10, _s11, _s20, _s21, pwiz::msdata::examples::initializeTiny(), MS1_INDEX_0, MS1_INDEX_1, MS2_INDEX_0, MS2_INDEX_1, pwiz::msdata::MSData::run, and pwiz::msdata::Run::spectrumListPtr.
Referenced by Run().
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inlineprotected |
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inlineprotected |
Definition at line 65 of file DemuxHelpersTest.cpp.
References _s10, pwiz::analysis::TryGetScanIDToken(), and unit_assert.
Referenced by Run().
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inlineprotected |
Definition at line 76 of file DemuxHelpersTest.cpp.
References pwiz::msdata::Precursor::activation, pwiz::msdata::Spectrum::binaryDataArrayPtrs, pwiz::msdata::Spectrum::defaultArrayLength, pwiz::msdata::SpectrumIdentity::id, pwiz::msdata::SpectrumIdentity::index, pwiz::msdata::examples::initializeTiny(), pwiz::msdata::Precursor::isolationWindow, MS_base_peak_intensity, MS_base_peak_m_z, MS_centroid_spectrum, MS_charge_state, MS_collision_energy, MS_collision_induced_dissociation, MS_filter_string, MS_highest_observed_m_z, MS_intensity_array, MS_isolation_window_lower_offset, MS_isolation_window_target_m_z, MS_isolation_window_upper_offset, MS_lowest_observed_m_z, MS_m_z, MS_m_z_array, MS_ms_level, MS_no_combination, MS_number_of_detector_counts, MS_peak_intensity, MS_preset_scan_configuration, MS_profile_spectrum, MS_scan_start_time, MS_scan_window_lower_limit, MS_scan_window_upper_limit, MS_selected_ion_m_z, MS_total_ion_current, pwiz::data::ParamContainer::paramGroupPtrs, pwiz::msdata::Spectrum::precursors, pwiz::msdata::MSData::run, pwiz::msdata::Spectrum::scanList, pwiz::msdata::ScanList::scans, pwiz::msdata::Precursor::selectedIons, pwiz::data::ParamContainer::set(), pwiz::msdata::Precursor::spectrumID, pwiz::msdata::Run::spectrumListPtr, UO_electronvolt, and UO_minute.
Referenced by FindNearbySpectraTest().
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inlineprotected |
Definition at line 223 of file DemuxHelpersTest.cpp.
References _s10, pwiz::msdata::SpectrumIdentity::id, pwiz::analysis::TryGetDemuxIndex(), unit_assert, and unit_assert_operator_equal.
Referenced by Run().
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inlineprotected |
Definition at line 236 of file DemuxHelpersTest.cpp.
References _s10, pwiz::analysis::TryGetOriginalIndex(), unit_assert, and unit_assert_operator_equal.
Referenced by Run().
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inlineprotected |
Definition at line 248 of file DemuxHelpersTest.cpp.
References _s10, _s20, pwiz::analysis::TryGetMSLevel(), unit_assert, and unit_assert_operator_equal.
Referenced by Run().
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Definition at line 264 of file DemuxHelpersTest.cpp.
References _s10, _s20, pwiz::analysis::TryGetNumPrecursors(), unit_assert, and unit_assert_operator_equal.
Referenced by Run().
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inlineprotected |
Definition at line 279 of file DemuxHelpersTest.cpp.
References _s10, pwiz::analysis::TryGetStartTime(), unit_assert, and unit_assert_equal.
Referenced by Run().
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inlineprotected |
Definition at line 291 of file DemuxHelpersTest.cpp.
References _msd, pwiz::analysis::FindNearbySpectra(), initializeLarge(), MS1_INDEX_0, MS2_INDEX_0, MS2_INDEX_1, pwiz::msdata::MSData::run, pwiz::msdata::Run::spectrumListPtr, unit_assert, unit_assert_operator_equal, and unit_assert_throws_what.
Referenced by Run().
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Definition at line 363 of file DemuxHelpersTest.cpp.
Referenced by FindNearbySpectraTest(), and SetUp().
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Definition at line 364 of file DemuxHelpersTest.cpp.
Referenced by FindNearbySpectraTest(), and SetUp().
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Definition at line 365 of file DemuxHelpersTest.cpp.
Referenced by SetUp().
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Definition at line 366 of file DemuxHelpersTest.cpp.
Referenced by FindNearbySpectraTest(), and SetUp().
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Definition at line 368 of file DemuxHelpersTest.cpp.
Referenced by FindNearbySpectraTest(), and SetUp().
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Definition at line 370 of file DemuxHelpersTest.cpp.
Referenced by SetUp(), TryGetDemuxIndexTest(), TryGetMSLevelTest(), TryGetNumPrecursorsTest(), TryGetOriginalIndexTest(), TryGetScanIDTokenTest(), and TryGetStartTimeTest().
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Definition at line 371 of file DemuxHelpersTest.cpp.
Referenced by SetUp(), TryGetMSLevelTest(), and TryGetNumPrecursorsTest().
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Definition at line 372 of file DemuxHelpersTest.cpp.
Referenced by SetUp().
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Definition at line 373 of file DemuxHelpersTest.cpp.
Referenced by SetUp().