Here is a list of all class members with links to the classes they belong to:
- r -
- radius : pwiz::analysis::RegionSIC::Config
- RadiusUnits : pwiz::analysis::RegionSIC::Config
- radiusUnits : pwiz::analysis::RegionSIC::Config
- RadiusUnits_amu : pwiz::analysis::RegionSIC::Config
- RadiusUnits_ppm : pwiz::analysis::RegionSIC::Config
- RadiusUnits_Unknown : pwiz::analysis::RegionSIC::Config
- random_access_compressed_ifstream() : pwiz::util::random_access_compressed_ifstream
- rank : pwiz::identdata::SpectrumIdentificationItem
- raw_data : pwiz::data::pepxml::MSMSPipelineAnalysis, pwiz::data::pepxml::MSMSRunSummary
- raw_data_type : pwiz::data::pepxml::MSMSPipelineAnalysis, pwiz::data::pepxml::MSMSRunSummary
- rbegin() : pwiz::proteome::ModificationMap, pwiz::util::BinaryData< T >, pwiz::util::mru_list< Item, KeyExtractor >, pwiz::util::shared_map< keyT, valueT, _Pr, _Alloc >, pwiz::util::virtual_map< keyT, valueT, _Pr, _Alloc >
- read() : pwiz::data::FrequencyData, pwiz::data::peakdata::Feature, pwiz::data::peakdata::FeatureFile, pwiz::data::peakdata::Peak, pwiz::data::peakdata::PeakData, pwiz::data::peakdata::Peakel, pwiz::data::peakdata::PeakFamily, pwiz::data::peakdata::Scan, pwiz::data::peakdata::Software::Parameter, pwiz::data::peakdata::Software, pwiz::data::pepxml::AlternativeProtein, pwiz::data::pepxml::AminoAcidModification, pwiz::data::pepxml::AnalysisResult, pwiz::data::pepxml::EnzymaticSearchConstraint, pwiz::data::pepxml::Match, pwiz::data::pepxml::MatchData, pwiz::data::pepxml::ModAminoAcidMass, pwiz::data::pepxml::ModificationInfo, pwiz::data::pepxml::MSMSPipelineAnalysis, pwiz::data::pepxml::MSMSRunSummary, pwiz::data::pepxml::Parameter, pwiz::data::pepxml::PeptideProphetResult, pwiz::data::pepxml::Q3RatioResult, pwiz::data::pepxml::SampleEnzyme, pwiz::data::pepxml::SearchDatabase, pwiz::data::pepxml::SearchHit, pwiz::data::pepxml::SearchResult, pwiz::data::pepxml::SearchScore, pwiz::data::pepxml::SearchSummary, pwiz::data::pepxml::Specificity, pwiz::data::pepxml::SpectrumQuery, pwiz::identdata::DelimReader, pwiz::identdata::MascotReader, pwiz::identdata::Reader, pwiz::identdata::ReaderList, pwiz::identdata::Serializer_mzIdentML, pwiz::identdata::Serializer_pepXML, pwiz::identdata::Serializer_protXML, pwiz::identdata::Serializer_Text, pwiz::minimxml::basic_charcounter< Ch >, pwiz::msdata::Reader, pwiz::msdata::Reader_ABI, pwiz::msdata::Reader_ABI_T2D, pwiz::msdata::Reader_Agilent, pwiz::msdata::Reader_Bruker, pwiz::msdata::Reader_BTDX, pwiz::msdata::Reader_MGF, pwiz::msdata::Reader_MSn, pwiz::msdata::Reader_mz5, pwiz::msdata::Reader_mzML, pwiz::msdata::Reader_mzXML, pwiz::msdata::Reader_Shimadzu, pwiz::msdata::Reader_Thermo, pwiz::msdata::Reader_UIMF, pwiz::msdata::Reader_UNIFI, pwiz::msdata::Reader_Waters, pwiz::msdata::ReaderList, pwiz::msdata::Serializer_MGF, pwiz::msdata::Serializer_MSn, pwiz::msdata::Serializer_mzML, pwiz::msdata::Serializer_mzXML, pwiz::proteome::Reader, pwiz::proteome::Reader_FASTA, pwiz::proteome::ReaderList, pwiz::proteome::Serializer_FASTA, pwiz::tradata::Reader, pwiz::tradata::ReaderList, pwiz::tradata::Serializer_traML, Reader1, Reader2, TestReader
- readAnalysisData : pwiz::identdata::Serializer_mzIdentML::Config
- ReadBinary() : pwiz::analysis::MatrixIO
- ReadDeconvBlock() : pwiz::analysis::DemuxDebugReader
- ReadDemuxScheme() : pwiz::analysis::PrecursorMaskCodec
- Reader_FASTA() : pwiz::proteome::Reader_FASTA
- readerConfig : Reader1
- ReaderConfig() : Reader1::ReaderConfig
- readerConfig : Reader2
- ReaderConfig() : Reader2::ReaderConfig
- ReaderFail() : pwiz::identdata::ReaderFail, pwiz::msdata::ReaderFail, pwiz::proteome::ReaderFail, pwiz::tradata::ReaderFail
- ReaderTestConfig() : pwiz::util::ReaderTestConfig
- ReadHeader() : pwiz::analysis::DemuxDebugReader
- readIds() : pwiz::msdata::Reader, pwiz::msdata::Reader_ABI, pwiz::msdata::Reader_UNIFI, pwiz::msdata::ReaderList
- readSequenceCollection : pwiz::identdata::Serializer_mzIdentML::Config
- readSpectrumQueries : pwiz::identdata::Serializer_pepXML::Config, pwiz::identdata::Serializer_protXML::Config
- ReadWriteTest() : DemuxDebugRWTest
- real : TestDatum
- recalculate() : pwiz::analysis::PrecursorRecalculator, pwiz::analysis::PrecursorRecalculatorDefault
- record : pwiz::analysis::PepxmlRecordReader::Config, pwiz::analysis::PepxmlRecordReader::record, pwiz::peptideid::PeptideID
- Record() : pwiz::peptideid::PeptideID::Record
- record() : pwiz::peptideid::PeptideID_flat, pwiz::peptideid::PeptideID_pepXml, pwiz::peptideid::PeptideIDMap
- Record() : pwiz::proteome::IPIFASTADatabase::Record
- record() : pwiz::util::MSIHandler
- Record() : pwiz::util::MSIHandler::Record
- recordDelim : pwiz::identdata::Serializer_Text::Config
- records() : pwiz::proteome::IPIFASTADatabase
- recordset : pwiz::analysis::PepxmlRecordReader
- recreate() : pwiz::msdata::Index_mzML
- rectangle() : pwiz::util::Image
- red : pwiz::util::Image::Color
- reference : pwiz::msdata::SpectrumIterator, pwiz::proteome::Digestion::const_iterator, pwiz::util::BinaryData< T >, pwiz::util::CharIndexedVectorConstIterator< T >, pwiz::util::CharIndexedVectorIterator< T >, pwiz::util::IntegerSet::Iterator, pwiz::util::shared_map< keyT, valueT, _Pr, _Alloc >, pwiz::util::virtual_map< keyT, valueT, _Pr, _Alloc >
- reference_ : pwiz::analysis::RTMatches_IsContainedIn< T >
- RefineMassVal() : pwiz::analysis::SpectrumList_PrecursorRefine
- refinePeaks() : pwiz::analysis::CwtPeakDetector
- RegexCVMap() : pwiz::identdata::RegexCVMap
- RegionAnalyzer() : pwiz::analysis::RegionAnalyzer
- regionAnalyzer_ : pwiz::analysis::RegionSIC, pwiz::analysis::RegionSlice, pwiz::analysis::RegionTIC
- RegionSIC() : pwiz::analysis::RegionSIC
- RegionSlice() : pwiz::analysis::RegionSlice
- RegionTIC() : pwiz::analysis::RegionTIC
- regularizeSums : pwiz::analysis::SpectrumList_Demux::Params
- relation_map : pwiz::data::Term
- relations : pwiz::data::Term
- relaxLowMass : pwiz::analysis::MS2NoiseFilter::Config, TestMS2Denoise
- releaseDate : pwiz::identdata::SearchDatabase
- remove() : pwiz::analysis::MZRTField< T >
- remove_zeros() : pwiz::analysis::ExtraZeroSamplesFilter
- removeListener() : pwiz::util::IterationListenerRegistry
- removeNeutralLossPrecursors : TestETDMassFilter
- removeNeutralLossSpecies : pwiz::analysis::PrecursorMassFilter::Config
- removePrecursor : pwiz::analysis::PrecursorMassFilter::Config, TestETDMassFilter
- removeReducedChargePrecursors : pwiz::analysis::PrecursorMassFilter::Config, TestETDMassFilter
- rend() : pwiz::proteome::ModificationMap, pwiz::util::BinaryData< T >, pwiz::util::mru_list< Item, KeyExtractor >, pwiz::util::shared_map< keyT, valueT, _Pr, _Alloc >, pwiz::util::virtual_map< keyT, valueT, _Pr, _Alloc >
- replacementResidue : pwiz::identdata::SubstitutionModification
- REPORT_DIGIT : CSHA1
- REPORT_HEX : CSHA1
- REPORT_HEX_SHORT : CSHA1
- REPORT_TYPE : CSHA1
- ReportHash() : CSHA1
- ReportHashStl() : CSHA1
- resampledintensity_ : ralab::base::ms::PeakPicker< TReal, TIntegrator >
- resampledmz_ : ralab::base::ms::PeakPicker< TReal, TIntegrator >
- reserve() : pwiz::util::BinaryData< T >
- Reset() : CSHA1
- reset() : pwiz::util::SHA1Calculator, ralab::base::resample::Bin1D
- Residue() : pwiz::identdata::Residue
- residueFormula : pwiz::proteome::AminoAcid::Info::Record
- residues : pwiz::identdata::MassTable, pwiz::identdata::Modification, pwiz::identdata::SearchModification
- resize() : pwiz::minimxml::SAXParser::saxstring, pwiz::util::BinaryData< T >
- resolution_ : ralab::base::ms::PeakPicker< TReal, TIntegrator >
- result_type : EnzymePtr_missedCleavages, EnzymePtr_specificity
- resultFilename() : pwiz::util::ReaderTestConfig
- retentionTime : Goober, pwiz::data::FrequencyData, pwiz::data::peakdata::Feature, pwiz::data::peakdata::Peak, pwiz::data::peakdata::Peakel, pwiz::data::peakdata::Scan, pwiz::msdata::SpectrumInfo, pwiz::tradata::Target, pwiz::tradata::Transition, Simple
- retentionTimeMax() : Goober, pwiz::data::peakdata::Feature, pwiz::data::peakdata::Peakel, Simple
- retentionTimeMin() : Goober, pwiz::data::peakdata::Feature, pwiz::data::peakdata::Peakel, Simple
- retentionTimes : pwiz::tradata::Compound, pwiz::tradata::Peptide
- retentionTimeSec : pwiz::data::pepxml::SpectrumQuery, pwiz::peptideid::PeptideID::Location, pwiz::peptideid::PeptideID::Record
- reverse_iterator : pwiz::util::BinaryData< T >, pwiz::util::CharIndexedVector< T >, pwiz::util::mru_list< Item, KeyExtractor >, pwiz::util::shared_map< keyT, valueT, _Pr, _Alloc >, pwiz::util::virtual_map< keyT, valueT, _Pr, _Alloc >
- Revision() : pwiz::analysis::Version, pwiz::identdata::Version, pwiz::msdata::Version, pwiz::proteome::Version, pwiz::tradata::Version, pwiz::Version
- rhsPeptide : TestOperator
- roc_data_point : pwiz::data::pepxml::PeptideProphetSummary
- RootHandler() : RootHandler
- Row : ridgeLine
- Rt : pwiz::identdata::Serializer_Text
- rt : SetRetentionTime
- rt_ : pwiz::analysis::RTMatches_Contains< T >
- rtime : rtimeMap
- rTime : TestScanSummerCalculator
- rTimeTol_ : pwiz::analysis::SpectrumList_ScanSummer
- RTMatches_Contains() : pwiz::analysis::RTMatches_Contains< T >
- RTMatches_IsContainedIn() : pwiz::analysis::RTMatches_IsContainedIn< T >
- rtMax : Simple
- rtMin : Simple
- rtRange : pwiz::analysis::RegionAnalyzer::Config
- rtTolerance : pwiz::analysis::PeakelGrower_Proximity::Config, pwiz::analysis::PeakelPicker_Basic::Config
- rtTolerance_ : pwiz::analysis::RTMatches_Contains< T >, pwiz::analysis::RTMatches_IsContainedIn< T >
- rtVariance : pwiz::data::peakdata::Feature
- Run() : CubicHermiteSplineTest, DemuxDebugRWTest, DemuxHelpersTest, DemuxSolverTest, MatrixIOTest
- run : pwiz::msdata::MSData
- Run() : pwiz::msdata::Run, SpectrumPeakExtractorTest
- RunSummary() : pwiz::analysis::RunSummary