Here is a list of all functions with links to the classes they belong to:
- s -
- Same() : pwiz::data::diff_impl::Same< object_type, config_type >
- SameDeep() : pwiz::data::diff_impl::SameDeep< object_type, config_type >
- Sample() : pwiz::identdata::Sample
- sample() : pwiz::math::MatchedFilter::SampledData< space_type >
- Sample() : pwiz::msdata::Sample
- SampleDatum() : pwiz::data::SampleDatum< abscissa_type, ordinate_type >
- SampleEnzyme() : pwiz::data::pepxml::SampleEnzyme
- sampleIndex() : pwiz::math::MatchedFilter::SampledData< space_type >
- SavitzkyGolaySmoother() : pwiz::analysis::SavitzkyGolaySmoother< T >
- saxstring() : pwiz::minimxml::SAXParser::saxstring
- scale() : pwiz::data::FrequencyData
- Scan() : pwiz::data::peakdata::Scan
- scanNumber() : pwiz::data::FrequencyData
- ScanSettings() : pwiz::msdata::ScanSettings
- ScanWindow() : pwiz::msdata::ScanWindow
- Score() : pwiz::frequency::PeakDetectorMatchedFilter::Score
- SearchDatabase() : pwiz::data::pepxml::SearchDatabase, pwiz::identdata::SearchDatabase
- SearchHit() : pwiz::data::pepxml::SearchHit
- SearchModification() : pwiz::identdata::SearchModification
- SearchResult() : pwiz::data::pepxml::SearchResult
- SearchScore() : pwiz::data::pepxml::SearchScore
- SearchSummary() : pwiz::data::pepxml::SearchSummary
- SecondHandler() : SecondHandler
- SelectedIndexPredicate() : SelectedIndexPredicate
- SelectedIon() : pwiz::msdata::SelectedIon
- seq_p() : pwiz::identdata::seq_p
- SeqMinus() : ralab::base::base::utilities::SeqMinus< TReal >
- SeqPlus() : ralab::base::base::utilities::SeqPlus< TReal >
- sequence() : pwiz::proteome::Peptide
- sequence_p() : pwiz::identdata::sequence_p
- Serializer_FASTA() : pwiz::proteome::Serializer_FASTA
- Serializer_MGF() : pwiz::msdata::Serializer_MGF
- Serializer_MSn() : pwiz::msdata::Serializer_MSn
- Serializer_mzIdentML() : pwiz::identdata::Serializer_mzIdentML
- Serializer_mzML() : pwiz::msdata::Serializer_mzML
- Serializer_mzXML() : pwiz::msdata::Serializer_mzXML
- Serializer_pepXML() : pwiz::identdata::Serializer_pepXML
- Serializer_protXML() : pwiz::identdata::Serializer_protXML
- Serializer_Text() : pwiz::identdata::Serializer_Text
- Serializer_traML() : pwiz::tradata::Serializer_traML
- set() : pwiz::data::ParamContainer, pwiz::identdata::DelimReader, pwiz::minimxml::SAXParser::Handler::Attributes::attribute, ralab::base::resample::Bucket1D
- setBreaks() : ralab::base::resample::Bin1D
- setDataProcessingPtr() : pwiz::msdata::ChromatogramListBase, pwiz::msdata::SpectrumListBase
- setDebug() : pwiz::identdata::Pep2MzIdent
- setHandler() : pwiz::util::TabReader
- setMode() : pwiz::msdata::MemoryMRUCache< PtrType, KeyExtractor >, pwiz::proteome::ProteinListCache
- setMspa() : pwiz::identdata::Pep2MzIdent
- setMZIntensityArrays() : pwiz::msdata::Spectrum
- setMZIntensityPairs() : pwiz::msdata::Spectrum
- setParamMap() : pwiz::identdata::Pep2MzIdent
- setParserIndex() : pwiz::minimxml::SAXParser::Handler::Attributes
- setPattern() : pwiz::identdata::RegexCVMap
- SetRetentionTime() : SetRetentionTime
- setTimeIntensityArrays() : pwiz::msdata::Chromatogram
- setTimeIntensityPairs() : pwiz::msdata::Chromatogram
- SetUp() : CubicHermiteSplineTest, DemuxDebugRWTest, DemuxHelpersTest, DemuxSolverTest, MatrixIOTest, SpectrumPeakExtractorTest
- setVerbose() : pwiz::identdata::Pep2MzIdent
- SHA1_ostream() : pwiz::util::SHA1_ostream
- SHA1Calculator() : pwiz::util::SHA1Calculator
- SHA1Filter() : pwiz::util::SHA1Filter
- shared_map() : pwiz::util::shared_map< keyT, valueT, _Pr, _Alloc >
- shift() : pwiz::data::FrequencyData
- shortName() : pwiz::cv::CVTermInfo
- Simple() : Simple
- SimpleAnalyzer() : SimpleAnalyzer
- SimplePeakArea() : ralab::base::ms::SimplePeakArea< TReal >
- SimplePicker() : ralab::base::ms::SimplePicker< TReal >
- SimpleProgressCallback() : SimpleProgressCallback
- simulateKL() : pwiz::analysis::SpectrumList_ChargeFromIsotope
- simulateSSE() : pwiz::analysis::SpectrumList_ChargeFromIsotope
- simulateTotIntensity() : pwiz::analysis::SpectrumList_ChargeFromIsotope
- SingleReadWrite() : MatrixIOTest
- size() : FilterWrapper, MyBase, pwiz::analysis::ChromatogramList_Filter, pwiz::analysis::ChromatogramListWrapper, pwiz::analysis::ProteinList_DecoyGenerator, pwiz::analysis::ProteinList_Filter, pwiz::analysis::SpectrumList_Demux, pwiz::analysis::SpectrumList_Filter, pwiz::analysis::SpectrumList_ScanSummer, pwiz::analysis::SpectrumList_Sorter, pwiz::data::BinaryIndexStream, pwiz::data::Index, pwiz::data::MemoryIndex, pwiz::math::OrderedPairContainerRef, pwiz::msdata::ChromatogramList, pwiz::msdata::ChromatogramListSimple, pwiz::msdata::detail::ChromatogramList_ABI, pwiz::msdata::detail::ChromatogramList_Agilent, pwiz::msdata::detail::ChromatogramList_Bruker, pwiz::msdata::detail::ChromatogramList_Shimadzu, pwiz::msdata::detail::ChromatogramList_Thermo, pwiz::msdata::detail::ChromatogramList_Waters, pwiz::msdata::detail::SpectrumList_ABI, pwiz::msdata::detail::SpectrumList_ABI_T2D, pwiz::msdata::detail::SpectrumList_Agilent, pwiz::msdata::detail::SpectrumList_Bruker, pwiz::msdata::detail::SpectrumList_Shimadzu, pwiz::msdata::detail::SpectrumList_Thermo, pwiz::msdata::detail::SpectrumList_UIMF, pwiz::msdata::detail::SpectrumList_UNIFI, pwiz::msdata::detail::SpectrumList_Waters, pwiz::msdata::SpectrumList, pwiz::msdata::SpectrumListSimple, pwiz::msdata::SpectrumListWrapper, pwiz::proteome::ProteinList, pwiz::proteome::ProteinListSimple, pwiz::proteome::ProteinListWrapper, pwiz::util::BinaryData< T >, pwiz::util::CharIndexedVector< T >, pwiz::util::IntegerSet, pwiz::util::mru_list< Item, KeyExtractor >, pwiz::util::MSIHandler, pwiz::util::shared_map< keyT, valueT, _Pr, _Alloc >, pwiz::util::virtual_map< keyT, valueT, _Pr, _Alloc >
- smooth() : pwiz::analysis::SavitzkyGolaySmoother< T >, pwiz::analysis::Smoother, pwiz::analysis::WhittakerSmoother
- smooth_copy() : pwiz::analysis::SavitzkyGolaySmoother< T >, pwiz::analysis::Smoother, pwiz::analysis::WhittakerSmoother
- Software() : pwiz::data::peakdata::Software, pwiz::msdata::Software, pwiz::tradata::Software
- software_p() : pwiz::identdata::software_p
- Solve() : pwiz::analysis::DemuxSolver, pwiz::analysis::NNLSSolver
- solve() : pwiz::math::LinearLeastSquares< LinearLeastSquaresType_LU >, pwiz::math::LinearLeastSquares< LinearLeastSquaresType_QR >, pwiz::math::LinearSolver< LinearSolverType_LU >, pwiz::math::LinearSolver< LinearSolverType_QR >
- sonarMzToDriftBinRange() : pwiz::analysis::SpectrumList_IonMobility, pwiz::msdata::detail::SpectrumList_Waters
- source() : pwiz::msdata::ComponentList
- SourceFile() : pwiz::msdata::SourceFile
- sowPeak() : pwiz::analysis::PeakelGrower, pwiz::analysis::PeakelGrower_Proximity
- sowPeaks() : pwiz::analysis::PeakelGrower
- Specificity() : pwiz::data::pepxml::Specificity
- specificTermini() : pwiz::proteome::DigestedPeptide
- SpectraData() : pwiz::identdata::SpectraData
- spectrum() : FilterWrapper, MyBase, MyWrapper, pwiz::analysis::SpectrumList_3D, pwiz::analysis::SpectrumList_ChargeFromIsotope, pwiz::analysis::SpectrumList_ChargeStateCalculator, pwiz::analysis::SpectrumList_Demux, pwiz::analysis::SpectrumList_Filter, pwiz::analysis::SpectrumList_IonMobility, pwiz::analysis::SpectrumList_LockmassRefiner, pwiz::analysis::SpectrumList_MetadataFixer, pwiz::analysis::SpectrumList_MZRefiner, pwiz::analysis::SpectrumList_MZWindow, pwiz::analysis::SpectrumList_PeakFilter, pwiz::analysis::SpectrumList_PeakPicker, pwiz::analysis::SpectrumList_PrecursorRecalculator, pwiz::analysis::SpectrumList_PrecursorRefine, pwiz::analysis::SpectrumList_ScanSummer, pwiz::analysis::SpectrumList_Smoother, pwiz::analysis::SpectrumList_Sorter, pwiz::analysis::SpectrumList_TitleMaker, pwiz::analysis::SpectrumList_ZeroSamplesFilter, pwiz::msdata::detail::SpectrumList_ABI, pwiz::msdata::detail::SpectrumList_ABI_T2D, pwiz::msdata::detail::SpectrumList_Agilent, pwiz::msdata::detail::SpectrumList_Bruker, pwiz::msdata::detail::SpectrumList_Shimadzu, pwiz::msdata::detail::SpectrumList_Thermo, pwiz::msdata::detail::SpectrumList_UIMF, pwiz::msdata::detail::SpectrumList_UNIFI, pwiz::msdata::detail::SpectrumList_Waters
- Spectrum() : pwiz::msdata::Spectrum
- spectrum() : pwiz::msdata::SpectrumList, pwiz::msdata::SpectrumListCache, pwiz::msdata::SpectrumListSimple, pwiz::msdata::SpectrumListWrapper
- spectrum3d() : pwiz::analysis::SpectrumList_3D, pwiz::msdata::detail::SpectrumList_Agilent, pwiz::msdata::detail::SpectrumList_Waters
- SpectrumBinaryData() : pwiz::analysis::SpectrumBinaryData
- spectrumCache() : pwiz::msdata::SpectrumListCache
- spectrumCount() : pwiz::msdata::Index_mzML
- SpectrumIdentification() : pwiz::identdata::SpectrumIdentification
- SpectrumIdentificationItem() : pwiz::identdata::SpectrumIdentificationItem
- SpectrumIdentificationList() : pwiz::identdata::SpectrumIdentificationList
- SpectrumIdentificationProtocol() : pwiz::identdata::SpectrumIdentificationProtocol
- SpectrumIdentificationResult() : pwiz::identdata::SpectrumIdentificationResult
- spectrumIdentity() : FilterWrapper, MyBase, pwiz::analysis::SpectrumList_Demux, pwiz::analysis::SpectrumList_Filter, pwiz::analysis::SpectrumList_ScanSummer, pwiz::analysis::SpectrumList_Sorter, pwiz::msdata::detail::SpectrumList_ABI, pwiz::msdata::detail::SpectrumList_ABI_T2D, pwiz::msdata::detail::SpectrumList_Agilent, pwiz::msdata::detail::SpectrumList_Bruker, pwiz::msdata::detail::SpectrumList_Shimadzu, pwiz::msdata::detail::SpectrumList_Thermo, pwiz::msdata::detail::SpectrumList_UIMF, pwiz::msdata::detail::SpectrumList_UNIFI, pwiz::msdata::detail::SpectrumList_Waters, pwiz::msdata::Index_mzML
- SpectrumIdentity() : pwiz::msdata::SpectrumIdentity
- spectrumIdentity() : pwiz::msdata::SpectrumList, pwiz::msdata::SpectrumListSimple, pwiz::msdata::SpectrumListWrapper
- SpectrumIdentityFromMzXML() : pwiz::msdata::SpectrumIdentityFromMzXML
- SpectrumIdentityFromXML() : pwiz::msdata::SpectrumIdentityFromXML
- SpectrumIndices() : pwiz::analysis::IDemultiplexer, pwiz::analysis::MSXDemultiplexer, pwiz::analysis::OverlapDemultiplexer
- spectrumInfo() : pwiz::analysis::MSDataCache
- SpectrumInfo() : pwiz::msdata::SpectrumInfo
- SpectrumIterator() : pwiz::msdata::SpectrumIterator
- SpectrumList_3D() : pwiz::analysis::SpectrumList_3D
- SpectrumList_ChargeFromIsotope() : pwiz::analysis::SpectrumList_ChargeFromIsotope
- SpectrumList_ChargeStateCalculator() : pwiz::analysis::SpectrumList_ChargeStateCalculator
- SpectrumList_Demux() : pwiz::analysis::SpectrumList_Demux
- SpectrumList_Filter() : pwiz::analysis::SpectrumList_Filter
- SpectrumList_FilterPredicate_ActivationType() : pwiz::analysis::SpectrumList_FilterPredicate_ActivationType
- SpectrumList_FilterPredicate_AnalyzerType() : pwiz::analysis::SpectrumList_FilterPredicate_AnalyzerType
- SpectrumList_FilterPredicate_ChargeStateSet() : pwiz::analysis::SpectrumList_FilterPredicate_ChargeStateSet
- SpectrumList_FilterPredicate_DefaultArrayLengthSet() : pwiz::analysis::SpectrumList_FilterPredicate_DefaultArrayLengthSet
- SpectrumList_FilterPredicate_IdSet() : pwiz::analysis::SpectrumList_FilterPredicate_IdSet
- SpectrumList_FilterPredicate_IndexSet() : pwiz::analysis::SpectrumList_FilterPredicate_IndexSet
- SpectrumList_FilterPredicate_MSLevelSet() : pwiz::analysis::SpectrumList_FilterPredicate_MSLevelSet
- SpectrumList_FilterPredicate_MzPresent() : pwiz::analysis::SpectrumList_FilterPredicate_MzPresent
- SpectrumList_FilterPredicate_Polarity() : pwiz::analysis::SpectrumList_FilterPredicate_Polarity
- SpectrumList_FilterPredicate_PrecursorMzSet() : pwiz::analysis::SpectrumList_FilterPredicate_PrecursorMzSet
- SpectrumList_FilterPredicate_ScanEventSet() : pwiz::analysis::SpectrumList_FilterPredicate_ScanEventSet
- SpectrumList_FilterPredicate_ScanNumberSet() : pwiz::analysis::SpectrumList_FilterPredicate_ScanNumberSet
- SpectrumList_FilterPredicate_ScanTimeRange() : pwiz::analysis::SpectrumList_FilterPredicate_ScanTimeRange
- SpectrumList_FilterPredicate_ThermoScanFilter() : pwiz::analysis::SpectrumList_FilterPredicate_ThermoScanFilter
- SpectrumList_IonMobility() : pwiz::analysis::SpectrumList_IonMobility
- SpectrumList_LockmassRefiner() : pwiz::analysis::SpectrumList_LockmassRefiner
- SpectrumList_MetadataFixer() : pwiz::analysis::SpectrumList_MetadataFixer
- SpectrumList_MZRefiner() : pwiz::analysis::SpectrumList_MZRefiner
- SpectrumList_MZWindow() : pwiz::analysis::SpectrumList_MZWindow
- SpectrumList_PeakFilter() : pwiz::analysis::SpectrumList_PeakFilter
- SpectrumList_PeakPicker() : pwiz::analysis::SpectrumList_PeakPicker
- SpectrumList_PrecursorRecalculator() : pwiz::analysis::SpectrumList_PrecursorRecalculator
- SpectrumList_PrecursorRefine() : pwiz::analysis::SpectrumList_PrecursorRefine
- SpectrumList_ScanSummer() : pwiz::analysis::SpectrumList_ScanSummer
- SpectrumList_Smoother() : pwiz::analysis::SpectrumList_Smoother
- SpectrumList_Sorter() : pwiz::analysis::SpectrumList_Sorter
- SpectrumList_TitleMaker() : pwiz::analysis::SpectrumList_TitleMaker
- SpectrumList_ZeroSamplesFilter() : pwiz::analysis::SpectrumList_ZeroSamplesFilter
- SpectrumListBase() : pwiz::msdata::SpectrumListBase
- SpectrumListCache() : pwiz::msdata::SpectrumListCache
- SpectrumListWrapper() : pwiz::msdata::SpectrumListWrapper
- SpectrumPeakExtractor() : pwiz::analysis::SpectrumPeakExtractor
- SpectrumQuery() : pwiz::data::pepxml::SpectrumQuery
- spectrumStats() : pwiz::analysis::RegionAnalyzer
- SpectrumStats() : pwiz::analysis::RegionAnalyzer::SpectrumStats
- SpectrumTable() : pwiz::analysis::SpectrumTable
- SpectrumToIndices() : pwiz::analysis::IPrecursorMaskCodec, pwiz::analysis::PrecursorMaskCodec
- SpectrumWorkerThreads() : pwiz::msdata::SpectrumWorkerThreads
- startElement() : AnotherRootHandler, FifthHandler, FirstHandler, PrintEventHandler, pwiz::data::peakdata::HandlerFeature, pwiz::data::peakdata::HandlerPeak, pwiz::data::peakdata::HandlerPeakel, pwiz::minimxml::SAXParser::Handler, pwiz::minimxml::XMLWriter, RootHandler, SecondHandler
- starts_with() : pwiz::minimxml::SAXParser::saxstring
- stats() : pwiz::analysis::RegionAnalyzer
- Stats() : pwiz::analysis::RegionAnalyzer::Stats, pwiz::math::Stats
- Status() : pwiz::minimxml::SAXParser::Handler::Status
- str() : pwiz::analysis::Version, pwiz::identdata::Version, pwiz::msdata::Version, pwiz::proteome::Version, pwiz::tradata::Version, pwiz::Version
- string() : pwiz::util::Image
- StringMatchCVMap() : pwiz::identdata::StringMatchCVMap
- stringToOptimization() : pwiz::analysis::SpectrumList_Demux::Params
- stringUp() : pwiz::util::Image
- SubstitutionModification() : pwiz::identdata::SubstitutionModification
- suggestedDetailLevel() : HasBinaryDataPredicate, pwiz::analysis::ChromatogramList_Filter::Predicate, pwiz::analysis::SpectrumList_Filter::Predicate, pwiz::analysis::SpectrumList_FilterPredicate_MzPresent
- sumAmplitude() : pwiz::data::peakdata::PeakFamily
- sumArea() : pwiz::data::peakdata::PeakFamily
- sumSquares() : pwiz::data::FrequencyData
- sumSquaresModel() : pwiz::frequency::TruncatedLorentzianEstimator
- sumSubScansNaive() : pwiz::analysis::SpectrumList_ScanSummer
- swap() : msclr::pinned_gcroot< T >, pwiz::proteome::ModificationMap, pwiz::util::BinaryData< T >, pwiz::util::shared_map< keyT, valueT, _Pr, _Alloc >, pwiz::util::virtual_map< keyT, valueT, _Pr, _Alloc >
- swapMZIntensityArrays() : pwiz::msdata::Spectrum